Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA_1328Hypothetical protein; Heparinase II/III-like. (625 aa)    
Predicted Functional Partners:
AGA_1327
Glycosyl transferase group 1.
       0.817
hisA
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
  
     0.654
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.617
rsmB
Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
    0.578
AGA_936
Uncharacterised conserved protein UCP032025.
  
     0.506
rpoN
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
     0.471
AGA_1302
Bifunctional protein phosphoglycerate mutase [EC:5.4.2.1] fructose-2,6-bisphosphatase [EC:3.1.3.46].
  
     0.448
AGA_1934
Outer membrane protein, OmpA/MotB, C-terminal.
  
     0.442
djlA
Heat shock protein DnaJ, N-terminal.
  
     0.431
AGA_1455
GCN5-related N-acetyltransferase.
  
     0.414
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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