Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
emrAMultidrug resistance protein A. (352 aa)    
Predicted Functional Partners:
emrB
EmrB/QacA family drug resistance transporter; Belongs to the major facilitator superfamily.
 
 
 0.966
AGA_1991
Major facilitator superfamily MFS_1.
  
 
 0.828
tolC
Type I secretion outer membrane protein, TolC family; Outer membrane efflux protein.
 
 0.781
AGA_1440
Hypothetical protein predicted by Glimmer/Critica.
       0.768
nodT-4
RND efflux system, outer membrane lipoprotein, NodT family.
  
  0.644
AGA_2135
Major facilitator superfamily MFS-1.
  
 
 0.637
nodT-5
RND efflux system, outer membrane lipoprotein, NodT family.
  
  0.637
nodT-2
RND efflux system, outer membrane lipoprotein, NodT family; Outer membrane efflux protein.
  
  0.625
nodT-6
RND efflux system, outer membrane lipoprotein, NodT family.
  
  0.607
nodT-3
RND efflux system, outer membrane lipoprotein, NodT family.
  
  0.601
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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