sufE protein (Acetobacter ghanensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sufE

COG: SufE protein probably involved in Fe-S center assembly. (146 aa)

Predicted Functional Partners:

sufS

0.973

AGA_391

0.863

sufB

0.830

hslV

0.814

hslU

0.814

sufD

0.812

sufC

0.783

AGA_1487

0.625

AGA_1488

0.625

Your Current Organism:

Acetobacter ghanensis

NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGA_1487	AGA_1488	AGA_1487	AGA_1488	Two-component system, NtrC family, sensor kinase.	PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.	0.999
AGA_1487	hslU	AGA_1487	AGA_1490	Two-component system, NtrC family, sensor kinase.	ATP-dependent HslUV protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	0.626
AGA_1487	hslV	AGA_1487	AGA_1489	Two-component system, NtrC family, sensor kinase.	ATP-dependent HslUV protease, peptidase subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.	0.630
AGA_1487	sufE	AGA_1487	AGA_1491	Two-component system, NtrC family, sensor kinase.	COG: SufE protein probably involved in Fe-S center assembly.	0.625
AGA_1488	AGA_1487	AGA_1488	AGA_1487	PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.	Two-component system, NtrC family, sensor kinase.	0.999
AGA_1488	AGA_391	AGA_1488	AGA_391	PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.	Hypothetical protein.	0.624
AGA_1488	hslU	AGA_1488	AGA_1490	PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.	ATP-dependent HslUV protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	0.694
AGA_1488	hslV	AGA_1488	AGA_1489	PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.	ATP-dependent HslUV protease, peptidase subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.	0.697
AGA_1488	sufE	AGA_1488	AGA_1491	PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.	COG: SufE protein probably involved in Fe-S center assembly.	0.625
AGA_1488	sufS	AGA_1488	AGA_2063	PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.	Cysteine desulfurase / selenocysteine lyase; [EC:2.8.1.7 4.4.1.16]; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.	0.624
AGA_391	AGA_1488	AGA_391	AGA_1488	Hypothetical protein.	PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.	0.624
AGA_391	sufB	AGA_391	AGA_2066	Hypothetical protein.	Cysteine desulfurase activator complex subunit SufB; SUF system FeS cluster assembly, SufBD, sufB: FeS assembly protein SufB.	0.803
AGA_391	sufC	AGA_391	AGA_2065	Hypothetical protein.	Fe-S cluster assembly ATP-binding protein.	0.864
AGA_391	sufD	AGA_391	AGA_2064	Hypothetical protein.	FeS assembly protein SufD.	0.803
AGA_391	sufE	AGA_391	AGA_1491	Hypothetical protein.	COG: SufE protein probably involved in Fe-S center assembly.	0.863
hslU	AGA_1487	AGA_1490	AGA_1487	ATP-dependent HslUV protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	Two-component system, NtrC family, sensor kinase.	0.626
hslU	AGA_1488	AGA_1490	AGA_1488	ATP-dependent HslUV protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.	0.694
hslU	hslV	AGA_1490	AGA_1489	ATP-dependent HslUV protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	ATP-dependent HslUV protease, peptidase subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.	0.999
hslU	sufE	AGA_1490	AGA_1491	ATP-dependent HslUV protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	COG: SufE protein probably involved in Fe-S center assembly.	0.814
hslV	AGA_1487	AGA_1489	AGA_1487	ATP-dependent HslUV protease, peptidase subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.	Two-component system, NtrC family, sensor kinase.	0.630

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About