STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1522Protein of unknown function DUF1013. (196 aa)    
Predicted Functional Partners:
AGA_251
COG: Uncharacterized protein conserved in bacteria.
  
   
 0.773
lysK
lysyl-tRNA synthetase, class I; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.772
AGA_1303
Import inner membrane translocase, subunit Tim44.
  
     0.745
AGA_2247
Protein of unknown function DUF2312; Belongs to the UPF0335 family.
  
   
 0.711
AGA_867
Protein of unknown function DUF2312; Belongs to the UPF0335 family.
  
   
 0.711
recO
DNA repair protein RecO (recombination protein O); Involved in DNA repair and RecF pathway recombination.
  
     0.698
rpmI
Large subunit ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
    0.669
oxaA
Putative inner membrane protein translocase component YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.660
AGA_816
Transcriptional regulator; Helix-turn-helix type 3.
  
     0.645
AGA_1549
Putative thiol:disulfide interchange protein.
  
     0.598
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.