STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1555Outer membrane protein; Bacterial surface antigen (D15). (645 aa)    
Predicted Functional Partners:
AGA_1556
Protein of unknown function DUF490.
 
 
 0.996
plsC
1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
     0.564
AGA_974
Protein of unknown function DUF2272.
  
     0.514
omp
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.483
AGA_1341
Hypothetical protein; Mammalian cell entry related.
  
     0.472
AGA_1562
Hypothetical protein.
  
     0.468
ompA
Outer membrane protein.
  
     0.457
AGA_213
Protein of unknown function DUF330.
  
     0.438
ompH
Outer membrane chaperone Skp (OmpH).
  
     0.431
tolC
Type I secretion outer membrane protein, TolC family; Outer membrane efflux protein.
  
     0.427
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.