Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1573Hypothetical protein. (158 aa)    
Predicted Functional Partners:
AGA_2189
Hypothetical protein; Peptidase aspartic, eukaryotic predicted.
  
     0.717
AGA_959
Hypothetical protein.
  
     0.701
AGA_1429
Hypothetical protein.
  
   
 0.692
dnaK
HSP70 family molecular chaperone.
    
   0.684
dnaK-2
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
   0.684
AGA_1244
Hypothetical protein.
  
     0.665
ompH
Outer membrane chaperone Skp (OmpH).
  
     0.650
AGA_2253
Hypothetical protein.
  
     0.625
AGA_974
Protein of unknown function DUF2272.
  
     0.614
AGA_2443
TonB-dependent receptor, beta-barrel.
  
     0.610
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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