STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1611Hypothetical protein; COG: Carbamoylphosphate synthase large subunit (split gene in MJ). (387 aa)    
Predicted Functional Partners:
AGA_1612
Hypothetical protein; COG: Uncharacterized membrane-associated protein.
 
     0.955
AGA_1426
Hypothetical protein; CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
     0.596
AGA_1613
Membrane-bound lytic murein transglycosylase B.
 
     0.580
AGA_1677
Endonuclease/exonuclease/phosphatase.
  
     0.573
AGA_1562
Hypothetical protein.
  
     0.501
AGA_974
Protein of unknown function DUF2272.
  
     0.498
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.493
AGA_766
Hypothetical protein.
  
     0.485
AGA_1614
Membrane-bound lytic murein transglycosylase B.
       0.468
rlpA
Lipoprotein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.468
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.