STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dosDiguanylate phosphodiesterase, predicted. (303 aa)    
Predicted Functional Partners:
AGA_1772
Diguanylate cyclase/phosphodiesterase.
     0.993
AGA_1961
Hypothetical protein; Diguanylate cyclase, predicted.
 
  0.980
AGA_647
Diguanylate cyclase/phosphodiesterase.
 
     0.976
AGA_1131
Diguanylate cyclase/phosphodiesterase.
 
    0.970
pleD
Hypothetical protein; Diguanylate cyclase, predicted.
 0.920
AGA_2590
Diguanylate cyclase.
 
  0.825
cckA
Sensory box histidine kinase/response regulator; ATPase-like, ATP-binding domain.
  
 
 0.668
dos-2
Sensory box protein.
  
 0.657
AGA_2592
Metal dependent phosphohydrolase.
 
   
 0.646
mcpA-2
Chemotaxis methyl-accepting receptor, signalling.
   
  0.536
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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