STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdoCysteine dioxygenase type I. (199 aa)    
Predicted Functional Partners:
AGA_1861
Rhodanese domain-containing protein; Rhodanese-like.
 
  
 0.971
ssuD
Alkanesulfonate monooxygenase.
 
    0.836
AGA_1859
Hypothetical protein; Class II aldolase/adducin, N-terminal.
 
     0.800
AGA_1858
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
 
     0.665
AGA_1854
Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
 
     0.601
AGA_1869
acyl-CoA dehydrogenase type 2 domain protein.
  
     0.563
AGA_1583
Pyridoxal-dependent decarboxylase.
    
  0.526
AGA_1856
LysR family transcriptional regulator; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
 
     0.508
gsh1
Glutamate-cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
     
  0.507
ssuA
Aliphatic sulfonate ABC transporter periplasmic ligand-binding protein.
  
    0.497
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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