STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA_1893Putative transposase; IstB-like ATP-binding protein. (268 aa)    
Predicted Functional Partners:
istA-2
Integrase, catalytic core.
 
   0.876
AGA_100
Putative DNA replication protein; PHAST result (e-value 8e-25).
  
     0.774
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
   
 
 0.726
AGA_1895
Isoquinoline 1-oxidoreductase, beta subunit.
       0.554
AGA_1892
Transposase, IS66.
       0.526
AGA_1896
Isoquinoline 1-oxidoreductase, beta subunit; Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
       0.512
iorA
Isoquinoline 1-oxidoreductase, alpha subunit.
       0.512
istA
IstA; Integrase, catalytic core.
  
   0.478
istA-3
Integrase, catalytic core.
  
   0.478
istA-4
Integrase, catalytic core.
  
   0.478
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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