STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1923Hypothetical protein. (381 aa)    
Predicted Functional Partners:
AGA_2018
Hypothetical protein.
 
     0.796
AGA_2019
Hypothetical protein; Diacylglycerol kinase, catalytic domain.
 
     0.793
AGA_2014
fatty-acyl-CoA synthase.
  
   
 0.791
AGA_2015
fatty-acyl-CoA synthase.
  
   
 0.785
AGA_2024
Hypothetical protein; COG: CMP-2-keto-3-deoxyoctulosonic acid synthetase.
 
     0.776
AGA_2016
Acyl carrier protein; Phosphopantetheine-binding.
 
   
 0.773
bioF
Glycine C-acetyltransferase; [EC:2.3.1.29]; serine palmitoyltransferase.
 
   
 0.764
AGA_2020
Metallophosphoesterase.
 
     0.664
AGA_2023
Fatty acid hydroxylase.
 
     0.650
aroK
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
    
  0.637
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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