STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1945N-carbamoyl-L-amino-acid hydrolase. (414 aa)    
Predicted Functional Partners:
gabT
4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.877
panC
Pantoate-beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.869
pyrC-2
Dihydroorotase.
  
 
 0.811
AGA_1947
Amidinotransferase.
 
  
  0.733
AGA_1946
Gyoxylate/hydroxypyruvate reductase A; [EC:1.1.1.79 1.1.1.81].
       0.675
pucG
Aminotransferase; Putative serine-pyruvate aminotransferase.
 
 
  0.675
AGA_2457
Hypothetical protein; Polysaccharide deacetylase, putative urate.
 
  
  0.649
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.600
AGA_2456
Hypothetical protein; Putative oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase.
   
  0.576
gltD
Glutamate synthase (NADPH/NADH) small chain; [EC:1.4.1.13 1.4.1.14].
  
 
  0.539
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.