STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1950General L-amino acid transport system ATP-binding protein. (250 aa)    
Predicted Functional Partners:
AGA_1949
Polar amino acid transport system substrate-binding protein; Extracellular solute-binding protein, family 3.
 0.999
AGA_285
Polar amino acid transport system substrate-binding protein.
 0.999
oppF
Peptide/nickel transport system ATP-binding protein.
    
0.918
lysR-6
LysR family transcriptional regulator; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
 
     0.819
oppF-2
Oligopeptide/dipeptide ABC transporter, ATPase subunit.
     0.614
gltS
[EC:1.4.7.1]; glutamate synthase (NADPH) large subunit (EC:1.4.1.13).
   
  
 0.600
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.551
AGA_1953
Oxoglutarate/iron-dependent oxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
 
    0.497
AGA_1721
ABC transporter related; ABC nitrate/sulphonate/bicarbonate family transporter, ATPase subunit.
 
      0.493
AGA_1951
TonB-dependent receptor, beta-barrel.
       0.473
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.