STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily. (361 aa)    
Predicted Functional Partners:
oppC
Binding-protein dependent transport system inner membrane protein.
 0.999
oppB
Binding-protein-dependent transport systems inner membrane component.
 
 0.999
AGA_1825
Hypothetical protein; Bacterial extracellular solute-binding protein, family 5.
 
 0.978
AGA_1501
Hypothetical protein; Bacterial extracellular solute-binding protein, family 5.
 
 0.977
oppA
Extracellular solute-binding protein family 5.
  
 0.970
oppF
Peptide/nickel transport system ATP-binding protein.
 
  
 
0.967
oppF-2
Oligopeptide/dipeptide ABC transporter, ATPase subunit.
 
  
 
0.921
AGA_126
ABC transporter related.
 
     
0.899
AGA_1954
Aldolase II superfamily protein.
  
    0.566
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
    
0.537
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.