Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
oppFPeptide/nickel transport system ATP-binding protein. (190 aa)    
Predicted Functional Partners:
oppC
Binding-protein dependent transport system inner membrane protein.
 0.999
oppB
Binding-protein-dependent transport systems inner membrane component.
 0.998
oppF-2
Oligopeptide/dipeptide ABC transporter, ATPase subunit.
     0.994
AGA_1501
Hypothetical protein; Bacterial extracellular solute-binding protein, family 5.
  
 0.977
AGA_1825
Hypothetical protein; Bacterial extracellular solute-binding protein, family 5.
 
 0.977
oppD
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
  
 
0.967
oppA
Extracellular solute-binding protein family 5.
  
 0.937
AGA_1950
General L-amino acid transport system ATP-binding protein.
    
0.918
pstB
Phosphate transport system ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.899
hisP
Polar amino acid transport system ATP-binding protein.
 
    
0.837
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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