STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vanAVanillate monooxygenase. (350 aa)    
Predicted Functional Partners:
AGA_1980
Hypothetical protein predicted by Glimmer/Critica.
       0.746
AGA_1981
Hypothetical protein predicted by Glimmer/Critica.
       0.685
lysR-7
Transcriptional regulator, LysR family; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
 
     0.670
gltS
[EC:1.4.7.1]; glutamate synthase (NADPH) large subunit (EC:1.4.1.13).
     
  0.615
AGA_2416
Unnamed protein product; Belongs to the cytochrome P450 family.
 
  
 0.513
AGA_2425
Dioxygenase.
 
  
 
0.504
appA
4-phytase / acid phosphatase; [EC:3.1.3.26 3.1.3.2].
  
     0.437
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.