STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1987TonB-dependent receptor, beta-barrel. (724 aa)    
Predicted Functional Partners:
AGA_341
TonB family protein.
  
   0.604
AGA_2583
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.597
fcuA
TonB-dependent siderophore receptor.
  
     0.548
AGA_2585
TonB-dependent receptor.
  
     0.544
AGA_1804
Phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.540
int-2
Integrase, catalytic core, phage; Belongs to the 'phage' integrase family.
  
     0.499
AGA_2584
Hypothetical protein; COG: Fe2+-dicitrate sensor, membrane component.
  
    0.473
AGA_1011
tonB_Cterm: TonB family C-terminal domain.
   
   0.470
AGA_423
Hypothetical protein; COG: Type V secretory pathway, adhesin AidA.
   
   0.470
AGA_1744
PepSY-associated TM helix domain protein.
  
     0.447
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.