STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nifBRadical SAM. (369 aa)    
Predicted Functional Partners:
AGA_1997
GCN5-related N-acetyltransferase.
 
   
 0.961
AGA_1994
Hypothetical protein.
 
     0.956
hypE
AIR synthase related protein; Putative methanogenesis marker protein 2.
 
     0.956
nitA
Putative nitrilase.
 
     0.956
AGA_1993
HI0933-like protein.
 
     0.949
AGA_2000
Hypothetical protein; COG: Predicted peroxiredoxins.
 
   
 0.945
WbdA
Glycosyl transferase, group 1.
 
     0.944
prpE
propionyl-CoA synthetase.
       0.707
AGA_2001
Transcriptional regulator.
 
     0.623
lipA
Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
     
 0.525
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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