STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_2001Transcriptional regulator. (482 aa)    
Predicted Functional Partners:
AGA_1997
GCN5-related N-acetyltransferase.
 
     0.634
AGA_696
Putative L-amino-acid oxidase precursor.
  
  
  0.605
AGA_2000
Hypothetical protein; COG: Predicted peroxiredoxins.
 
     0.600
pdc
Pyruvate decarboxylase; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain.
   
 0.598
AGA_1994
Hypothetical protein.
 
     0.581
nifB
Radical SAM.
 
     0.581
trpB-2
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
 
 0.572
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
   
 
 0.572
AGA_987
enoyl-CoA hydratase.
   
 
 0.571
hypE
AIR synthase related protein; Putative methanogenesis marker protein 2.
 
     0.570
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.