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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
envZTwo-component system, OmpR family, osmolarity sensor histidine kinase EnvZ. (442 aa)    
Predicted Functional Partners:
ompR
Two component transcriptional regulator; Signal transduction response regulator, receiver domain.
 
 0.994
lpd
Dihydrolipoamide dehydrogenase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
    
 0.987
AGA_1487
Two-component system, NtrC family, sensor kinase.
 
 0.972
AGA_1488
PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.
 
 
 0.935
AGA_987
enoyl-CoA hydratase.
    
  0.825
AGA_1670
Hypothetical protein; Putative cytochrome c, class I.
    
 
 0.809
phoB
Two-component system, OmpR family, phosphate regulon response regulator PhoB.
  
 0.777
chvI
Two component transcriptional regulator.
  
 0.758
cckA
Sensory box histidine kinase/response regulator; ATPase-like, ATP-binding domain.
 
 
 0.745
pleD
Hypothetical protein; Diguanylate cyclase, predicted.
  
 0.726
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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