STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA_21446-phosphogluconate dehydrogenase, NAD-binding domain. (291 aa)    
Predicted Functional Partners:
AGA_987
enoyl-CoA hydratase.
 
 
 0.898
tkrA
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
 
  
 0.766
mmsA
Methylmalonate-semialdehyde dehydrogenase.
  
 
 0.731
ttuD
Hydroxypyruvate reductase.
    
 0.712
garL
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.706
AGA_1869
acyl-CoA dehydrogenase type 2 domain protein.
  
 
 0.694
AGA_837
Alcohol dehydrogenase, zinc-binding.
  
  
  0.678
AGA_1858
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
  
  0.646
AGA_1946
Gyoxylate/hydroxypyruvate reductase A; [EC:1.1.1.79 1.1.1.81].
  
  
  0.636
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
  0.627
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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