STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_2189Hypothetical protein; Peptidase aspartic, eukaryotic predicted. (316 aa)    
Predicted Functional Partners:
xerC
Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.813
pip
Proline iminopeptidase; Belongs to the peptidase S33 family.
       0.773
AGA_2443
TonB-dependent receptor, beta-barrel.
  
     0.753
AGA_1364
Hypothetical protein.
  
     0.750
ompH
Outer membrane chaperone Skp (OmpH).
  
     0.746
AGA_246
COG: Predicted membrane protein.
  
     0.742
AGA_236
Hypothetical protein; COG: Predicted nucleoside-diphosphate-sugar epimerases.
  
     0.739
AGA_2276
Hypothetical protein.
  
     0.732
AGA_974
Protein of unknown function DUF2272.
  
     0.731
ompA-3
Outer membrane protein.
  
     0.724
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.