STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_2335TPR repeat-containing protein; Tetratricopeptide TPR-1. (275 aa)    
Predicted Functional Partners:
AGA_2334
Heptosyltransferase family protein; Glycosyl transferase, family 9.
 
     0.812
AGA_1249
Protein of unknown function DUF1491.
  
     0.702
AGA_2111
RpsU-divergently transcribed protein.
  
     0.659
mreD
Hypothetical protein.
  
     0.658
AGA_2568
Protein of unknown function DUF1849.
  
     0.622
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.610
AGA_1209
Hypothetical protein; COG: Predicted SAM-dependent methyltransferase.
 
     0.585
AGA_2368
Hypothetical protein; Zinc finger, CHCC-type.
  
     0.577
AGA_2336
Glycosyl transferase, group 1 family protein.
       0.545
AGA_2338
Hypothetical protein.
 
     0.538
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.