STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcaRIclR family transcriptional regulator, pca regulon regulatory protein. (260 aa)    
Predicted Functional Partners:
AGA_1058
UreA carboxylase.
  
 
  0.939
kdgR
IclR family transcriptional regulator.
  
     0.770
acoC
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); Alpha/beta hydrolase fold-1.
     
 0.576
acoC-2
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); Alpha/beta hydrolase fold-1.
     
 0.576
AGA_2408
Hypothetical protein predicted by Glimmer/Critica.
       0.542
AGA_1068
Allophanate hydrolase subunit 1.
   
    0.533
AGA_1069
Allophanate hydrolase subunit 2.
   
    0.512
ykfB
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.470
AGA_2144
6-phosphogluconate dehydrogenase, NAD-binding domain.
  
  
  0.458
yahF
FdrA family protein.
    
  0.455
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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