STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_2425Dioxygenase. (440 aa)    
Predicted Functional Partners:
AGA_2426
Glutamine synthetase.
 
  
  0.928
thcD
ferredoxin--NAD+ reductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
  0.824
AGA_2424
Ferredoxin.
 
  
  0.761
AGA_2428
Amidohydrolase 1.
 
     0.599
AGA_732
Hypothetical protein; Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
  
  
 0.574
AGA_2416
Unnamed protein product; Belongs to the cytochrome P450 family.
 
     0.569
AGA_2427
Secretory lipase.
       0.566
etf
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
     
 0.540
AGA_1531
Oxidoreductase domain protein.
     
  0.507
vanA
Vanillate monooxygenase.
 
  
 
0.504
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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