STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_2425Dioxygenase. (440 aa)    
Predicted Functional Partners:
AGA_2426
Glutamine synthetase.
 
     0.928
thcD
ferredoxin--NAD+ reductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
  0.776
AGA_2424
Ferredoxin.
 
  
  0.746
AGA_2428
Amidohydrolase 1.
 
     0.600
AGA_2416
Unnamed protein product; Belongs to the cytochrome P450 family.
 
     0.570
AGA_732
Hypothetical protein; Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
  
  
 0.568
AGA_2427
Secretory lipase.
       0.566
AGA_2429
N-acyl homoserine lactone hydrolase; Metallo-beta-lactamase family protein.
       0.502
vanA
Vanillate monooxygenase.
 
  
 
0.448
AGA_2307
Rieske (2Fe-2S) domain protein.
 
  
 
0.421
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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