Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA_2443TonB-dependent receptor, beta-barrel. (805 aa)    
Predicted Functional Partners:
AGA_1094
COG: Periplasmic protein TonB, links inner and outer membranes.
  
   0.767
AGA_694
TonB-dependent receptor, beta-barrel.
  
     0.758
oprB-3
Porin; Carbohydrate-selective porin OprB.
  
     0.757
AGA_1096
TonB-dependent receptor.
  
     0.756
AGA_2189
Hypothetical protein; Peptidase aspartic, eukaryotic predicted.
  
     0.753
fusB-6
Fusaric acid resistance protein, conserved region.
  
     0.743
AGA_423
Hypothetical protein; COG: Type V secretory pathway, adhesin AidA.
  
   0.723
AGA_246
COG: Predicted membrane protein.
  
     0.718
AGA_1426
Hypothetical protein; CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
     0.716
oprB-4
Carbohydrate-selective porin OprB.
  
     0.713
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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