STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
iorA-2Isoquinoline 1-oxidoreductase, alpha subunit. (153 aa)    
Predicted Functional Partners:
iorB
Isoquinoline 1-oxidoreductase, beta subunit.
  0.993
AGA_1895
Isoquinoline 1-oxidoreductase, beta subunit.
  0.967
AGA_1492
Membrane-bound aldehyde dehydrogenase, large subunit.
  0.958
xdhB
Xanthine dehydrogenase large subunit.
 
  
  0.938
AGA_1882
Xanthine dehydrogenase FAD-binding subunit.
 
 0.894
AGA_1896
Isoquinoline 1-oxidoreductase, beta subunit; Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
  
  0.828
xdhC-2
Xanthine dehydrogenase accessory protein XdhC.
 
  
 0.786
AGA_2622
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Xanthine dehydrogenase accessory protein pucB.
 
  
 0.774
AGA_2480
Cytochrome c, class I.
       0.773
nodQ
Sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate.
     
 0.684
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.