Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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yneJTranscriptional regulator; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family. (287 aa)    
Predicted Functional Partners:
lysR-7
Transcriptional regulator, LysR family; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.755
dkgB
2,5-diketo-D-gluconate reductase.
       0.752
budR
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.750
lysR-2
LysR family transcriptional regulator; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.740
lysR-13
LysR family transcriptional regulator; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.736
AGA_2013
Transcriptional regulator, LysR family; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.721
lysR-10
LysR family transcriptional regulator; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.692
lysR-9
Transcriptional regulator, LysR family; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
 
     0.686
AGA_1853
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.683
lysR-4
LysR family transcriptional regulator; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.629
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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