Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cycBCytochrome c class I. (162 aa)    
Predicted Functional Partners:
mauB
Methylamine dehydrogenase heavy chain.
 
  
  0.959
AGA_2490
Methylamine dehydrogenase accessory protein MauD.
 
 
   0.957
mauA
Amine dehydrogenase; Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin; Belongs to the aromatic amine dehydrogenase light chain family.
 
     0.956
mauE
Putative methylamine utilization protein MauE.
 
     0.955
mauD
Hypothetical protein; MauD: methylamine dehydrogenase accessory protein MauD.
 
 
   0.895
AGA_2214
Hypothetical protein; Putative oxidoreductase (EC:1.1.1.-).
   
 0.834
AGA_1670
Hypothetical protein; Putative cytochrome c, class I.
 
 
 0.799
fdoH
Formate dehydrogenase, beta subunit.
   
  0.770
adhA
PQQ-dependent alcohol dehydrogenase.
 
 0.748
AGA_1861
Rhodanese domain-containing protein; Rhodanese-like.
 
  
  0.745
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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