STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_251COG: Uncharacterized protein conserved in bacteria. (177 aa)    
Predicted Functional Partners:
AGA_2247
Protein of unknown function DUF2312; Belongs to the UPF0335 family.
  
   
 0.773
AGA_867
Protein of unknown function DUF2312; Belongs to the UPF0335 family.
  
   
 0.773
AGA_1522
Protein of unknown function DUF1013.
  
   
 0.764
AGA_412
Hypothetical protein; COG: Inactivated superfamily I helicase.
  
     0.715
AGA_1303
Import inner membrane translocase, subunit Tim44.
  
     0.700
holC
DNA polymerase III subunit chi.
  
     0.698
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.693
lysK
lysyl-tRNA synthetase, class I; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.692
recO
DNA repair protein RecO (recombination protein O); Involved in DNA repair and RecF pathway recombination.
  
     0.686
AGA_1113
Protein of unknown function DUF1058.
  
     0.668
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.