STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_2525Outer membrane protein. (625 aa)    
Predicted Functional Partners:
AGA_1006
TonB-dependent receptor, beta-barrel.
  
 
 
 0.789
AGA_2523
Hypothetical protein predicted by Glimmer/Critica.
       0.768
AGA_1562
Hypothetical protein.
  
     0.757
AGA_2090
Putative 4-amino-4-deoxy-L-arabinose transferase.
  
     0.741
ftsK
Cell divisionFtsK/SpoIIIE.
    
 
 0.731
AGA_1342
Hypothetical protein.
  
 
   0.724
AGA_974
Protein of unknown function DUF2272.
  
     0.712
AGA_1429
Hypothetical protein.
  
     0.711
AGA_2189
Hypothetical protein; Peptidase aspartic, eukaryotic predicted.
  
     0.709
AGA_1364
Hypothetical protein.
  
     0.707
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.