Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
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[Homology]
Score
AGA_2590Diguanylate cyclase. (451 aa)    
Predicted Functional Partners:
phoB
Two-component system, OmpR family, phosphate regulon response regulator PhoB.
 
 
    0.899
AGA_2592
Metal dependent phosphohydrolase.
  
 0.857
AGA_1488
PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.
 
 0.840
AGA_1131
Diguanylate cyclase/phosphodiesterase.
  
 0.829
AGA_1132
Diguanylate phosphodiesterase, predicted.
  
 0.828
dos
Diguanylate phosphodiesterase, predicted.
 
  0.825
AGA_72
Putative phage protein; GGDEF: diguanylate cyclase (GGDEF) domain; PHAST result (e-value 1e-18).
 
0.817
cckA
Sensory box histidine kinase/response regulator; ATPase-like, ATP-binding domain.
 
 0.738
AGA_664
Diguanylate cyclase/phosphodiesterase with GAF sensor.
 
0.645
AGA_1487
Two-component system, NtrC family, sensor kinase.
 
 0.638
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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