Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
tetR-2Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal. (186 aa)    
Predicted Functional Partners:
AGA_2556
Hypothetical protein; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal.
  
     0.729
shc
Squalene-hopene cyclase.
 
     0.682
AGA_1967
Hypothetical protein; COG: Predicted peptidase.
  
     0.574
AGA_2598
Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal.
 
     0.560
AGA_2599
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.499
AGA_2600
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.499
oprM
RND efflux system outer membrane lipoprotein.
       0.499
dnaK
HSP70 family molecular chaperone.
       0.405
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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