STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_285Polar amino acid transport system substrate-binding protein. (517 aa)    
Predicted Functional Partners:
AGA_1950
General L-amino acid transport system ATP-binding protein.
 0.999
hisP
Polar amino acid transport system ATP-binding protein.
 0.999
AGA_1949
Polar amino acid transport system substrate-binding protein; Extracellular solute-binding protein, family 3.
 
0.983
AGA_1488
PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.
   
 0.857
nodQ
Sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate.
   
 
 0.816
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
  
 0.797
cckA
Sensory box histidine kinase/response regulator; ATPase-like, ATP-binding domain.
   
 0.770
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
  
 0.752
argH
Argininosuccinate lyase.
  
  
 0.744
AGA_1487
Two-component system, NtrC family, sensor kinase.
    
 0.731
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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