STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_303Ferrous iron transport protein, bacterial. (173 aa)    
Predicted Functional Partners:
ftr1
Iron permease FTR1; TIGR00145: FTR1 family protein.
 
  
 0.958
AGA_301
Hypothetical protein.
 
     0.920
oprB-6
Carbohydrate-selective porin OprB.
 
     0.672
AGA_1878
Hypothetical protein; Flavin reductase-like, FMN-binding.
  
     0.466
AGA_300
Hypothetical protein.
       0.452
oprB-7
Carbohydrate-selective porin OprB.
 
     0.452
oprB-8
Carbohydrate-selective porin OprB.
  
     0.414
AGA_173
TPR repeat-containing protein.
  
     0.407
oprB-9
Carbohydrate-selective porin OprB.
  
     0.403
AGA_2558
COG: Predicted integral membrane protein.
  
     0.402
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.