STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oprB-6Carbohydrate-selective porin OprB. (368 aa)    
Predicted Functional Partners:
oprB-8
Carbohydrate-selective porin OprB.
 
     0.976
oprB-7
Carbohydrate-selective porin OprB.
     0.865
AGA_303
Ferrous iron transport protein, bacterial.
 
     0.672
AGA_1967
Hypothetical protein; COG: Predicted peptidase.
  
     0.626
AGA_769
Hypothetical protein.
  
     0.550
oprB-5
Porin; Carbohydrate-selective porin OprB.
  
     0.544
fusB-7
Fusaric acid resistance protein, conserved region.
  
     0.540
AGA_301
Hypothetical protein.
 
     0.537
AGA_1769
Hypothetical protein.
  
     0.525
ftr1
Iron permease FTR1; TIGR00145: FTR1 family protein.
 
     0.518
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.