STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oprB-8Carbohydrate-selective porin OprB. (239 aa)    
Predicted Functional Partners:
oprB-9
Carbohydrate-selective porin OprB.
     0.994
oprB-6
Carbohydrate-selective porin OprB.
 
     0.976
oprB
Porin; Carbohydrate-selective porin OprB.
  
     0.642
AGA_307
Hypothetical protein.
 
     0.596
oprB-10
Carbohydrate-selective porin OprB.
  
     0.572
AGA_1967
Hypothetical protein; COG: Predicted peptidase.
  
     0.568
oprB-3
Porin; Carbohydrate-selective porin OprB.
  
     0.568
AGA_306
Hypothetical protein.
 
     0.561
AGA_2219
HpnL: putative membrane protein.
  
     0.543
AGA_2218
Hypothetical protein; HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN.
  
     0.527
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.