STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_327Hypothetical protein; Bacterial transcriptional activator domain. (662 aa)    
Predicted Functional Partners:
AGA_328
Hypothetical protein.
       0.773
AGA_330
Protein of unknown function DUF2159, secreted.
 
     0.665
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.578
AGA_73
Hypothetical protein.
  
     0.565
AGA_1019
Transcriptional regulator; Helix-turn-helix type 3.
  
    0.564
AGA_703
Integrase family protein; Integrase, catalytic core, phage; Belongs to the 'phage' integrase family.
  
     0.545
holA
DNA polymerase III subunit delta.
       0.539
AGA_326
Lytic transglycosylase-like, catalytic.
       0.481
hisC
Histidinol-phosphate aminotransferase.
  
     0.473
AGA_1224
Hypothetical protein; COG: NAD-dependent aldehyde dehydrogenases.
  
     0.469
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.