Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA_338TonB-dependent siderophore receptor. (768 aa)    
Predicted Functional Partners:
piuC
PKHD-type hydroxylase.
  
    0.788
AGA_2232
PKHD-type hydroxylase.
  
    0.783
AGA_337
Hypothetical protein; Sel1-like.
 
     0.747
AGA_341
TonB family protein.
  
   0.747
AGA_1011
tonB_Cterm: TonB family C-terminal domain.
   
   0.474
AGA_423
Hypothetical protein; COG: Type V secretory pathway, adhesin AidA.
   
   0.474
AGA_2583
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.462
AGA_2474
Protein of unknown function DUF1275.
  
     0.444
AGA_2584
Hypothetical protein; COG: Fe2+-dicitrate sensor, membrane component.
  
    0.426
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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