STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_338TonB-dependent siderophore receptor. (768 aa)    
Predicted Functional Partners:
piuC
PKHD-type hydroxylase.
  
    0.780
AGA_2232
PKHD-type hydroxylase.
  
    0.775
AGA_337
Hypothetical protein; Sel1-like.
 
     0.748
AGA_341
TonB family protein.
  
   0.745
AGA_1011
tonB_Cterm: TonB family C-terminal domain.
   
   0.470
AGA_423
Hypothetical protein; COG: Type V secretory pathway, adhesin AidA.
   
   0.470
AGA_2583
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.465
AGA_2474
Protein of unknown function DUF1275.
  
     0.444
AGA_1094
COG: Periplasmic protein TonB, links inner and outer membranes.
   
   0.420
exbB-2
Biopolymer transport protein ExbB.
  
  
 0.418
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.