STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_341TonB family protein. (281 aa)    
Predicted Functional Partners:
exbD-2
Biopolymer transport protein ExbD.
 
 
 0.936
exbB-2
Biopolymer transport protein ExbB.
 
 
 0.927
AGA_338
TonB-dependent siderophore receptor.
  
   0.745
AGA_1006
TonB-dependent receptor, beta-barrel.
  
 
 0.672
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.666
bhuR
Iron complex outermembrane recepter protein.
 
   0.648
fhuA
TonB-dependent siderophore receptor.
  
   0.626
AGA_2230
TonB-dependent siderophore receptor.
  
   0.608
exbD
Biopolymer transport protein ExbD.
  
 
 0.606
tolR
Biopolymer transport protein ExbD/TolR.
  
 
 0.606
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.