STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
istA-5IstA; Integrase, catalytic core. (510 aa)    
Predicted Functional Partners:
AGA_354
Putative transposase; IstB-like ATP-binding protein.
    0.863
trbI
Type IV secretion system protein VirB10.
       0.522
trbG
P-type conjugative transfer protein TrbG.
       0.522
trbF
Conjugal transfer protein TrbF.
       0.522
trbL
Conjugal transfer, TrbL/VirB6, TrbL_P: P-type conjugative transfer protein TrbL.
       0.522
AGA_1893
Putative transposase; IstB-like ATP-binding protein.
 
    0.421
AGA_1808
Putative transposase; IstB-like ATP-binding protein.
 
    0.420
AGA_2005
Putative transposase; IstB-like ATP-binding protein.
 
    0.420
AGA_2010
Putative transposase; IstB-like ATP-binding protein.
 
    0.420
AGA_685
Putative transposase; IstB-like ATP-binding protein.
 
    0.420
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.