STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_391Hypothetical protein. (703 aa)    
Predicted Functional Partners:
nifU
NifU-like domain-containing protein.
  
 0.972
AGA_1583
Pyridoxal-dependent decarboxylase.
     0.867
sufC
Fe-S cluster assembly ATP-binding protein.
  
  
 0.864
sufE
COG: SufE protein probably involved in Fe-S center assembly.
  
 0.863
sufD
FeS assembly protein SufD.
  
 
 0.803
sufB
Cysteine desulfurase activator complex subunit SufB; SUF system FeS cluster assembly, SufBD, sufB: FeS assembly protein SufB.
  
 
 0.803
AGA_390
Phosphoglycerate mutase; Histidine phosphatase superfamily, clade-1, alpha-ribazole phosphatase.
       0.777
AGA_1138
Hypothetical protein; Endonuclease/exonuclease/phosphatase.
    
   0.743
AGA_2622
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Xanthine dehydrogenase accessory protein pucB.
    
 0.731
manC
Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.724
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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