STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_409ATP-dependent exoDNAse beta subunit. (306 aa)    
Predicted Functional Partners:
AGA_410
ATP-dependent exoDNAse beta subunit.
     0.983
AGA_411
Hypothetical protein; COG: RecB family exonuclease.
 
  
 0.911
AGA_412
Hypothetical protein; COG: Inactivated superfamily I helicase.
 
  
 0.899
recO
DNA repair protein RecO (recombination protein O); Involved in DNA repair and RecF pathway recombination.
 
   
 0.744
holC
DNA polymerase III subunit chi.
  
     0.741
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.702
AGA_1185
Hypothetical protein; Lipopolysccharide-assembly, LptC-related.
  
     0.692
AGA_328
Hypothetical protein.
  
     0.684
AGA_1249
Protein of unknown function DUF1491.
  
     0.650
AGA_251
COG: Uncharacterized protein conserved in bacteria.
  
     0.635
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.