STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_410ATP-dependent exoDNAse beta subunit. (878 aa)    
Predicted Functional Partners:
AGA_409
ATP-dependent exoDNAse beta subunit.
     0.983
AGA_411
Hypothetical protein; COG: RecB family exonuclease.
 
  
 0.954
AGA_412
Hypothetical protein; COG: Inactivated superfamily I helicase.
 
  
 0.899
uvrD
DNA helicase II / ATP-dependent DNA helicase PcrA.
 
  
 0.791
holC
DNA polymerase III subunit chi.
  
     0.653
AGA_251
COG: Uncharacterized protein conserved in bacteria.
  
     0.621
imp
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.611
recO
DNA repair protein RecO (recombination protein O); Involved in DNA repair and RecF pathway recombination.
 
   
 0.604
gst
Glutathione S-transferase.
  
     0.597
AGA_413
Hypothetical protein; COG: Predicted ATPase or kinase.
     
 0.589
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.