STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctrA-2Two-component system, cell cycle response regulator CtrA. (255 aa)    
Predicted Functional Partners:
AGA_1488
PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.
 
 0.958
cckA
Sensory box histidine kinase/response regulator; ATPase-like, ATP-binding domain.
 
 0.947
phoR
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
 0.834
ragB
Integral membrane sensor signal transduction histidine kinase.
  
  0.818
pleD
Hypothetical protein; Diguanylate cyclase, predicted.
 
 0.736
AGA_2329
Integral membrane sensor signal transduction histidine kinase; ATPase-like, ATP-binding domain.
  
  0.735
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.720
chvG
Two component sensor histidine kinase ChvG.
  
 0.712
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.703
ctrA
Two component transcriptional regulator, winged helix family; Signal transduction response regulator, C-terminal.
  
  
 
0.685
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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