STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_487Putative hydrolase protein. (230 aa)    
Predicted Functional Partners:
tal
Glucose-6-phosphate isomerase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
 
 
 0.856
AGA_486
Uncharacterised protein family UPF0093; TIGR00701: conserved hypothetical protein TIGR00701.
       0.830
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
       0.827
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.792
ribD
[EC:3.5.4.26 1.1.1.193].
    
  0.728
pucG
Aminotransferase; Putative serine-pyruvate aminotransferase.
    
 0.696
AGA_668
HAD-superfamily hydrolase, subfamily IA, variant 1; Haloacid dehalogenase-like hydrolase.
 
 
 0.662
mtlK
Fructuronate reductase; Mannitol 2-dehydrogenase [EC:1.1.1.67].
 
  
 0.650
AGA_948
Cof-subfamily: Cof-like hydrolase.
    
 0.587
gph
Phosphoglycolate phosphatase.
    
 0.568
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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