STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbB-3MotA/TolQ/ExbB proton channel. (335 aa)    
Predicted Functional Partners:
exbD-3
Biopolymer transport protein ExbD.
 
 
 0.991
exbD
Biopolymer transport protein ExbD.
 
 
 0.964
AGA_558
Biopolymer transport protein ExbD/TolR.
 
 
 0.956
exbD-2
Biopolymer transport protein ExbD.
 
 
 0.912
AGA_1082
Biopolymer transport protein ExbD/TolR.
 
 
 0.903
tolR
Biopolymer transport protein ExbD/TolR.
 
 
 0.852
AGA_559
Hypothetical protein.
 
     0.843
AGA_555
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
     0.640
AGA_423
Hypothetical protein; COG: Type V secretory pathway, adhesin AidA.
 
   0.634
AGA_1011
tonB_Cterm: TonB family C-terminal domain.
  
   0.610
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.