STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cyaDCytochrome o ubiquinol oxidase operon protein cyoD. (110 aa)    
Predicted Functional Partners:
cyaA
Cytochrome o ubiquinol oxidase subunit II.
 
 0.999
cyaB
Cytochrome o ubiquinol oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
 0.999
cyaC
Cytochrome o ubiquinol oxidase subunit III.
 
 0.999
ctaD
Cytochrome c oxidase subunit I.
  
 0.994
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.991
adhB
Aldehyde dehydrogenase cytochrome c subunit; Cytochrome c, class I.
   
 
 0.675
sdhC
Succinate dehydrogenase/Fumarate reductase, transmembrane subunit.
   
 
 0.651
sdhB
Succinate dehydrogenase; Ferredoxin domain; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.639
AGA_1670
Hypothetical protein; Putative cytochrome c, class I.
  
 
  0.595
cioB
Cytochrome bd-I oxidase subunit II.
     
 0.584
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.