STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mgpS-2DNA helicase. (99 aa)    
Predicted Functional Partners:
mgpS
Helicase domain-containing protein.
     0.991
cobT-2
Cobaltochelatase CobT.
  
     0.577
pepA-2
Leucyl aminopeptidase; Peptidase M17; Belongs to the peptidase M17 family.
       0.557
fdxA
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.543
lysK
lysyl-tRNA synthetase, class I; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.497
rpsD
Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
     0.474
AGA_636
Hypothetical protein; GcrA cell cycle regulator.
  
     0.474
cobS-2
Cobaltochelatase CobS.
  
     0.456
suv3
Helicase domain protein; DNA/RNA helicase, C-terminal.
  
     0.448
xre
Transcriptional regulator; Protein of unknown function DUF2083,transcriptional regulator.
  
     0.437
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.