STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wpbEDegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (378 aa)    
Predicted Functional Partners:
capD
Polysaccharide biosynthesis protein CapD.
 
 
 0.995
AGA_1531
Oxidoreductase domain protein.
 
 
 0.980
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.922
nodL
Maltose O-acetyltransferase.
  
 
 0.859
kdsD
Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
  
 
 0.824
AGA_670
Hypothetical protein; COG: dTDP-glucose pyrophosphorylase.
  
  
 0.787
AGA_2617
NAD-dependent epimerase/dehydratase.
 
 
 0.778
AGA_599
Hypothetical protein.
       0.778
mutT-2
7,8-dihydro-8-oxoguanine triphosphatase.
  
 
 0.690
tagO
Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase; Glycosyl transferase, family 4, conserved region.
 
  
 0.679
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.